Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015853382.1_cds_XP_016512241.1_24904
CDS Infomation

[gene=LOC107829279] [db_xref=GeneID:107829279] [protein=DExH-box ATP-dependent RNA helicase DExH12-like] [partial=3'] [protein_id=XP_016512241.1] [location=complement(join(<14..72,190..579,1550..4516))] [gbkey=CDS]
Sequence

ATGTCGAACTTGGGGGGTGGTGCAGAGGCACATGCACGTTTCAAACAGTATGAATACAGA
GCTAACTCAAGTCTAGTCCTAACCACTGATTCTCGTCCTCGTGACACACATGAACCCAGT
GGCGAACCCGAATCGCTTTATGGTAAAATAGACCCAAAAACATTTGGTGATCGAGCTTAT
AAGGGCAGACCTCCTGAATTAGATGAGAAGCTTGAAAAGGCTAGGAAGAAGAAGGAGCGG
CAGCGGGACCCACTTGTATCCGAGCCCCCCACCAGGAAGAAGAGACGTTTACTTGTTCAG
GAAGAAAGTGTTCTTACTTCAACTGAGGAAGGTGTGTACCAGCCTAAGACTAAGGAGACT
AGGGCCGCTTATGAGGCTATGCTCAGTATGATTCAGCAGCAACTTGGTGGACAGCCGTTG
AACATTGTGAGCGGGGCAGCTGATGAGATATTGGCTGTGTTGAAGAATGATAACTTTAAG
AATCCTGACAAGAAGAAGGAAATTGAAAAGCTGTTGAATCCGATATCCAACCAGGTGTTC
GATCAGTTGGTGTCGATTGGGCGACTCATCACTGATTATCAAGGCGATGGTGATGCGGCA
GCGGTGACTGGTGCAGGTGATGGTGATGAAGCTCTTGACGATGATGTCGGGGTAGCGGTT
GAGTTCGAGGAGAATGAAGAGGAAGATGATGAAGAGAGTGACCTTGATGTAGTGCCTGAT
GATGAAGAGGATGATGATGATGTGCTGGAAGCTAGTGGTTCTGGTGCTATGCAGATGGGT
GGTGGCATTGACGATGATGAGATGCGCGAGGCGGATGAGGGTATGGCGTTGAATGTGCAG
GACATGGATGCTTATTGGCTTCAGAGAAAGATCTCTCAAGCTTACGAGCAGCAGATTGAT
CCGCAACAGAGCCAAAAGCTTGCTGAAGAGGTTCTTAAGATTCTTGCTGAAGGCGATGAT
CGTGAAGTGGAAACCAAGTTACTGGTGCATCTCCAGTTTGATAAGTTCAGTCTCATCAAA
TATCTTCTGCGGAACCGGCTAAAGGTAGTATGGGGTACTCGTCTTGCAAGGGCCGACGAG
CAAGAGAAAAAGGAGATTGAAGAAGAGATGTTGGGATTGGGGCCTGATCATGCCGCAATA
TTAGGGCAGCTGCATGCTACTAGGGCTACCCCAAAAGAGAGGCAGAAGATTCTTGAAAAA
AGCATTAGAGAAGAGGCTCGGCGTCTTAAAGATGAGACTGGTGTTGACGGTGGCGGAGAA
AGGAGGACGGCAGTTGTAGATAGAGACGTTGATAATGGTTGGTTAATGGGGCAGCGTCAG
TTACTTGATCTTGACGACCTTGCATTTCATCAAGGCGGTTTGTTGATGGCAAATAAGAAA
TGTGAGCTTCCAGTGGGGTCTTATAGGAATCATAAGAAGGGGTACGAGGAAGTTCACGTG
CCTGCTTTGAAGCCAAAGCCACTAGCCGCTGGTGAAGAGCTTGTGAAGATATCCTCTATT
CCGGAGTGGGCTCAACCAGCGTTCAGTGGGATGACACAATTGAACAGGGTGCAGAGTAAA
GTATATGAGACTGCCCTCTTCTCTCCGGAGAACATTTTGCTATGTGCTCCAACTGGTGCT
GGGAAGACCAATGTAGCTATGCTCACTATACTTCAGCAAATTGCACTTAACCGCAACGAA
GATGGATCATTCAACCACAACAATTATAAAATTGTATATGTGGCACCCATGAAAGCCCTT
GTTGCTGAAGTGGTTGGTAATCTCTCCAAGCGTTTGGAACATTATGGTGTCCAGGTGAAA
GAGTTGAGTGGCGATCAAACATTAACTCGTCAACAGATTGAAGAGACTCAAATTATTGTG
ACTACCCCAGAGAAATGGGATATTATAACCAGAAAGTCAGGTGATCGCACATATACACAG
CTTGTTAAACTTCTTATTATTGATGAGATACATCTCCTGCATGACAACCGAGGTCCTGTC
TTGGAGAGTATCATTGCGAGAACTATTAGACAGATTGAAACCACGAAAGAACATATTCGG
CTTGTTGGATTATCAGCAACGCTTCCAAATTATGAAGACGTGGCTGTGTTTTTGCGAGTT
GATCTGGACAAAGGTCTCTTCCATTTTGACAATAGCTATAGACCTGTACCGTTGGCTCAA
CAGTATATTGGAATTACTGTTAAGAAGCCACTGCAGAGATTCCAGTTGATGAATGATGTT
TGCTATGAGAAGGTGATTAGTGTTGCAGGCAAGCATCAGGTGCTTATTTTTGTGCATTCA
AGGAAGGAAACAAGTAAAACAGCTCGGGCAATAAGGGATACTGCACTTGCTAAAGACACC
CTTGGAAAGTTTTTGAAGGAGGAGAGTGTAGCTAGGGAGATTCTACAGTCTCAAACTGAG
CTTGTCAAGAGCAATGACCTCAAAGATCTTTTACCATATGGCTTTGCGATTCACCATGCA
GGGTTGGTTAGAACTGATCGGCAACTTGTGGAGGAGCTTTTTGCTGATGGTCATGTGCAA
GTGTTGGTTTCAACTGCAACTTTAGCGTGGGGTGTCAATTTACCTGCACATACCGTCATC
ATAAAGGGTACCCAGATTTACAATCCTGAAAAAGGAGCATGGACTGAACTCAGTCCTCTT
GATGTTATGCAAATGCTTGGCCGTGCTGGAAGGCCTCAATATGACACTTATGGCGAAGGA
ATCATCATAACCGGGCACAGTGAATTGCAGTACTATCTTTCTTTGATGAATCAGCAGCTT
CCTATTGAAAGTCAGTTCATATCCAAGTTGGCTGATCAGTTGAATGCAGAGATTGTCCTT
GGGACAGTACTGAATGCCAAAGAAGCATGCAAGTGGCTCCTATATACTTACCTCTATGTT
CGCATGGTGCGGAATCCCACACTCTATGGTCTAGCTGCTGATGCTCTCAAAACTGATTAT
ACTTTGGAGGAAAGGCGTGCCGACTTGGTCCATTCTGCTGCTACATTGCTGGACAAGAAT
AACTTGGTCAAGTATGATAGGAAAAGTGGATATTTCCAGGTGACTGACTTGGGTCGTATT
GCGAGCTATTATTATATAACTCATGGGACAATTTCCACATACAATGAGCATTTGAAGCCT
ACGATGGGTGATATTGAACTTTGTCGGCTTTTCTCTCTAAGTGAGGAATTCAAATATGTA
ACAGTCAGACAAGATGAGAAAATGGAATTGGCAAAGCTTCTGGATCGTGTTCCTATTCCG
GTAAAAGAGAGTCTTGAGGAGCCTAGTGCCAAGATCAATGTTCTATTGCAGGCATATATT
TCACGGTTGAAGCTTGAAGGGTTGTCTCTGTCATCTGACATGGTTTATATAACTCAGAGT
GCTGCACGTCTGATGCGAGCCCTTTTTGAGATTGTTCTGAAGAGAGGATGGGCTCA

Peptide Sequence

PEP ID

XP_016512241.1
PEP Infomation

PREDICTED: DExH-box ATP-dependent RNA helicase DExH12-like, partial [Nicotiana tabacum]
Sequence

MSNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPSGEPESLYGKIDPKTFGDRAY
KGRPPELDEKLEKARKKKERQRDPLVSEPPTRKKRRLLVQEESVLTSTEEGVYQPKTKET
RAAYEAMLSMIQQQLGGQPLNIVSGAADEILAVLKNDNFKNPDKKKEIEKLLNPISNQVF
DQLVSIGRLITDYQGDGDAAAVTGAGDGDEALDDDVGVAVEFEENEEEDDEESDLDVVPD
DEEDDDDVLEASGSGAMQMGGGIDDDEMREADEGMALNVQDMDAYWLQRKISQAYEQQID
PQQSQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKVVWGTRLARADE
QEKKEIEEEMLGLGPDHAAILGQLHATRATPKERQKILEKSIREEARRLKDETGVDGGGE
RRTAVVDRDVDNGWLMGQRQLLDLDDLAFHQGGLLMANKKCELPVGSYRNHKKGYEEVHV
PALKPKPLAAGEELVKISSIPEWAQPAFSGMTQLNRVQSKVYETALFSPENILLCAPTGA
GKTNVAMLTILQQIALNRNEDGSFNHNNYKIVYVAPMKALVAEVVGNLSKRLEHYGVQVK
ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV
LESIIARTIRQIETTKEHIRLVGLSATLPNYEDVAVFLRVDLDKGLFHFDNSYRPVPLAQ
QYIGITVKKPLQRFQLMNDVCYEKVISVAGKHQVLIFVHSRKETSKTARAIRDTALAKDT
LGKFLKEESVAREILQSQTELVKSNDLKDLLPYGFAIHHAGLVRTDRQLVEELFADGHVQ
VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEG
IIITGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVLNAKEACKWLLYTYLYV
RMVRNPTLYGLAADALKTDYTLEERRADLVHSAATLLDKNNLVKYDRKSGYFQVTDLGRI
ASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP
VKESLEEPSAKINVLLQAYISRLKLEGLSLSSDMVYITQSAARLMRALFEIVLKRGWA

Transcript Sequence

Gene sequence data has not been registered.